RNA-Seq

Pipeline

Step-by-Step Guide
IMB Bioinformatics Core App

References

Harvard Chan Bioinformatics Core

Babraham Bioinformatics

F1000Research

Cancer Research UK Cambridge Institute

Single-cell RNA-Seq

Pipeline

Step-by-Step Guide

References

Harvard Chan Bioinformatics Core

Babraham Bioinformatics

Seurat

Genome Assembly

Pipeline

Step-by-Step Guide

References

SPAdes

Velvet

SOAPdenovo

Canu

Necat

Variant Calling

Pipeline

Step-by-Step Guide
IMB Bioinformatics Core App

References

learn.gencore.bio.nyu.edu

Bioinformatics Team at the University of Texas

GATK

snpEff

ChIP-Seq

Pipeline

Step-by-Step Guide

References

Harvard Chan Bioinformatics Core

Babraham Bioinformatics

ENCODE3

Daniela Cassol @ UCR

Functional Enrichment

Pipeline

IMB Bioinformatics Core App

References

Gene Ontology (GO)

KEGG

GSEA & MSigDB

clusterProfiler

Reactome